|
EPIC-Potsdam
|
-
Minimum age
-
35
-
Maximum age
-
65
-
Newborns
-
-
Twins
-
-
Countries
-
-
International/National/Regional (region name)
-
Brandenburg
-
Ethnic Origin
-
-
Health Status
-
-
Number of participants
-
27,548
-
Number of participants with biosamples
-
-
Supplementary Information
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
EPIC-Potsdam
|
3299 participants
-
Start Date
-
2014
-
End Date
-
2020
-
Measurements & methods
-
Dietary intake
-
yes/no
-
-
Information collected on habitual food intake collected
-
Special dietary aspects collected (e.g. supplements, probiotics, prebiotics and synbiotics)
-
Methods
-
-
24-hour dietary recall
-
FFQ
-
24-hour dietary recall
-
Administration method
-
Face-to-face interview
-
FFQ
-
Type of questionnaire
-
Semi-quantitative
-
Administration method
-
Self-reported
-
Administration type
-
Web/computer-based
-
Reference period
-
Year
-
Anthropometric measurements
-
Weight/height
-
Measured
-
Waist/hip circumference
-
Measured
-
Sociodemographic information
-
Information collected
-
Sex, age, residence, education, etc.
-
Questionnaire name/set of questions
-
Questionnaire name/set of questions
-
Administration method
-
Self-reported
-
Medication
-
Information collected
-
Drug dosage and drug name
-
Antibiotics
-
Last treatment and frequency collected
-
Health status
-
Information collected
-
Various
-
Measurements
-
Various
-
Biological samples and laboratory measurements
-
Samples collected
-
Blood, urine, feces, hair
-
Biomarkers
-
Lipids
-
Measurement(s)
-
Various
-
Medium
-
Plasma, serum
-
Glucose
-
Measurement(s)
-
Various
-
Medium
-
Plasma, serum, RBC
-
Inflammation markers
-
Measurement(s)
-
Various
-
Medium
-
Plasma
-
Adiposity biomarkers
-
Measurement(s)
-
Various
-
Medium
-
Plasma
-
Other biomarkers
-
Measurement(s)
-
Various
-
Medium
-
Plasma, serum
-
Microbiome
-
Microbial material
-
16S rDNA (V3-V4 region)
-
Number of samples/number of individuals
-
3,299
-
Library source and library selection
-
Metabarcoding
-
Medium/tissue
-
Feces
-
Sampling collection method
-
Invitek tubes with DNA stabilizer (collected at home by participants)
-
Sequencing platform
-
Illumina MiSeq v3
-
Read length/depth
-
2x300bp/~20,000 reads
-
Further details
-
16S amplicon sequenced
-
Information on type of meal last eaten prior to sample extraction available
-
no
-
Files
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
EPIC-DZD
|
|
DONALD Study
|
The DONALD study is an ongoing, open cohort study conducted in Dortmund, Germany. In 1985 the study started to collect data on diet, growth, development, and metabolism of healthy children and adolescents. Since then, 35–40 infants are newly recruited every year. The participants are first examined at the age of 3-9 months and return for three more visits in the first year, two in the second year and thereafter annually until young adulthood. In the first study years, approximately 300 participants >2 years old were also recruited. Yearly examinations include 3-day weighed dietary records, anthropometric measurements, collection of 24-h urine samples (starting at age 3–4 years), interviews on lifestyle and medical examinations. Parental examinations (anthropometric measurements, lifestyle interviews) take place every four years. In subgroups, further data was collected, such as on chronobiology or metabolomics. Since 2005, in addition to the regular examinations, participants older than 18 years are invited every five years to provide a fasting blood sample.
-
Minimum age
-
0
-
Newborns
-
-
Twins
-
-
Countries
-
-
International/National/Regional (region name)
-
Dortmund and surrounding regions
-
Ethnic Origin
-
-
Health Status
-
-
Other criteria
-
-
Supplementary Information
-
Eligible are healthy infants (i.e., no prevalent diseases affecting growth and/or diet) from the city of Dortmund and surrounding communities, whose parents are willing to participate in a long-term study and of whom at least one has sufficient knowledge of the German language.
-
Number of participants
-
No Limit
-
Number of participants with biosamples
-
No Limit
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
DONALD
|
-
Start Date
-
1985
-
Measurements & methods
-
Dietary intake
-
yes/no
-
-
Information collected on habitual food intake collected
-
Information collected on type of diet (vegetarian/vegan/omnivore)
-
Special dietary aspects collected (e.g. supplements, probiotics, prebiotics and synbiotics)
-
Methods
-
-
24-hour dietary recall
-
Food records
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Number of recorded days
-
2-7
-
Portion size estimation
-
Standard portion sizes with aids such as pictures, models, standard household measure, utensils, etc.
-
Instrument validity
-
Bokhof B, Günther AL, Berg-Beckhoff G, Kroke A, Buyken AE. Validation of protein intake assessed from weighed dietary records against protein estimated from 24 h urine samples in children, adolescents and young adults participating in the Dortmund Nutritional and Longitudinally Designed (DONALD) Study. Public Health Nutr. 2010 Jun;13(6):826-34. doi: 10.1017/S136898000999317X. Epub 2010 Jan 15. PMID: 20074394
-
Alcohol consumption
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Tobacco consumption
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Physical activity
-
Questionnaire name/set of questions
-
Adolescent Physical Activity Recall Questionnaire (APARQ) by Booth et al., 2002 (https://doi.org/10.1097/00005768-200212000-00019)
-
Administration method
-
Face-to-face interview
-
Administration type
-
Paper-based
-
Sedentary behaviours
-
Questionnaire name/set of questions
-
Modified questions according to the German Health Interview and Examination Survey for Children and Adolescents (KiGGS); Opper et al. 2007 (https://doi.org/10.1007/s00103-007-0251-5)
-
Administration method
-
Face-to-face interview
-
Administration type
-
Paper-based
-
Anthropometric measurements
-
Weight/height
-
Measured
-
Waist/hip circumference
-
Measured
-
Other measurements
-
Upper arm circumference (every visit), abdominal circumference (0-2 years), head circumference (0-5 years), skinfolds (biceps, triceps, subscapular and suprailiac skin fold; every visit), Upper + lower leg circumference (approx. 4 x during childhood and adolescence), pelvis + shoulder width (approx. 4 x during childhood and adolescence), waist + hip circumference (from 3 years onwards), sitting height (from 3 years onwards)
-
Sociodemographic information
-
Information collected
-
Among others: Sex, age, socioeconomic factors (e.g. parental employment, parental education) and early life factors (e.g. birth weight, pregnancy duration, breastfeeding duration)
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Face-to-face interview
-
Administration type
-
Paper-based
-
Medication
-
Health status
-
Information collected
-
blood pressure, grip strength, family history of diseases, chronic diseases
-
Questionnaire name/set of questions
-
measured or set of questions
-
Administration method
-
Face-to-face interview
-
Administration type
-
Paper-based
-
Biological samples and laboratory measurements
-
Samples collected
-
24h-urine samples (from 3 years onwards), spot urine samples (0,25 - 3 years), blood samples (from 18 years onwards), stool samples (subsample from 18 years onwards), saliva (once during adolescence)
-
Number of samples
-
-
Biomarkers
-
Lipids
-
Measurement(s)
-
HDL, LDL and other
-
Medium
-
Serum
-
Glucose
-
Measurement(s)
-
Glucose
-
Medium
-
Plasma
-
Inflammation markers
-
Measurement(s)
-
IL-6, IL-18 and other
-
Medium
-
plasma or serum
-
Adiposity biomarkers
-
Measurement(s)
-
Leptin
-
Medium
-
serum
-
Other biomarkers
-
Measurement(s)
-
liver enzymes (ALT, AST, GGT) and others
-
Medium
-
plasma
-
Metabolomics
-
Measurement(s)
-
HP-LC and others
-
Medium
-
Urine, plasma
-
Untargeted approach
-
yes
-
Targeted groups
-
Amino acids
-
Genomics
-
DNA available
-
yes
-
Extraction protocol/ method
-
Chemagic Magnetic Separation Module (Lymphocytes); or salting out by prepIT purifier von Oragene (Saliva)
-
Genotyping
-
whole genome: Illumina Infinium Global Screening Array v2.0.
-
Microbiome
-
Microbial material
-
V3–V4 variable region of the 16S rRNA gene
-
Number of samples/number of individuals
-
128
-
Medium/tissue
-
Faeces
-
Sampling collection method
-
Solution: RNAlater
-
Time spent in room temperature
-
Approximately 3 days
-
Sequencing platform
-
MiSeq
-
Information on type of meal last eaten prior to sample extraction available
-
no
-
Files
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
DONALD
|
|
NU-AGE
|
-
Minimum age
-
65
-
Maximum age
-
79
-
Newborns
-
-
Twins
-
-
Countries
-
-
Ethnic Origin
-
-
Health Status
-
-
Other criteria
-
Free of major overt chronic diseases for at least 2 years (e.g., cancer, severe organ disease), living independently, and free of dementia
-
Number of participants
-
201
-
Number of participants with biosamples
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
Italian_cohort
|
-
Start Date
-
2012
-
End Date
-
2015
-
Measurements & methods
-
Dietary intake
-
yes/no
-
-
Information collected on habitual food intake collected
-
Information collected on type of diet (vegetarian/vegan/omnivore)
-
Special dietary aspects collected (e.g. supplements, probiotics, prebiotics and synbiotics)
-
Methods
-
-
Food records
-
Other methods
-
Food records
-
Administration method
-
Face-to-face interview
-
Administration type
-
Paper-based
-
Number of recorded days
-
2-7
-
Portion size estimation
-
Standard portion sizes with aids such as pictures, models, standard household measure, utensils, etc.
-
Instrument validity
-
No
-
Instrument development
-
Already existing
-
Instrument reference
-
Ostan et al., Front Physiol 2018
-
Other methods
-
Instrument(s) access
-
7-day food record template available
-
Alcohol consumption
-
Information collected
-
Intake
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Face-to-face interview
-
Administration type
-
Paper-based
-
Physical activity
-
Information collected
-
Scores (ADLs, IADLs, PASE)
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Face-to-face interview
-
Domains covered
-
Total physical activity
-
Sedentary behaviours
-
Information collected
-
Scores (ADLs, IADLs, PASE)
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Face-to-face interview
-
Anthropometric measurements
-
Weight/height
-
Measured
-
Waist/hip circumference
-
Measured
-
Other measurements
-
Body composition (DXA)
-
Sociodemographic information
-
Information collected
-
Sex, age
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Face-to-face interview
-
Medication
-
Information collected
-
Drug name
-
Questionnaire name/set of questions
-
Set of questions
-
Antibiotics
-
Yes (recent use of antibiotics was an exclusion criterion)
-
Administration method
-
Face-to-face interview
-
Health status
-
Questionnaire name/set of questions
-
Blood pressure, hand grip strength, clinical data, family history of diseases, etc.
-
Administration method
-
Face-to-face interview
-
Measurements
-
Various
-
Biological samples and laboratory measurements
-
Samples collected
-
Blood, feces
-
Number of samples
-
402
-
Biomarkers
-
Lipids
-
Measurement(s)
-
Various
-
Medium
-
Serum
-
Glucose
-
Measurement(s)
-
Various
-
Medium
-
-
Inflammation markers
-
Measurement(s)
-
Various
-
Adiposity biomarkers
-
Measurement(s)
-
Various
-
Other biomarkers
-
Measurement(s)
-
Various
-
Metabolomics
-
Measurement(s)
-
UPLC/Q-TOF-MS
-
Medium
-
Serum
-
Untargeted approach
-
yes
-
Microbiome
-
Microbial material
-
16S rDNA (V3-V4)
-
Number of samples/number of individuals
-
201
-
Library source and library selection
-
Metagenome (following the 16S Metagenomic Sequencing Library Preparation protocol by Illumina)
-
Medium/tissue
-
Faeces
-
Sampling collection method
-
Sterile collection tube
-
Time spent in room temperature
-
Few minutes
-
Sequencing platform
-
Illumina MiSeq
-
Read length/depth
-
2x250 bp
-
Further details
-
True sequencing
-
Preservation method
-
No, immediately -20°C until delivery to the lab (where stored at -80°C)
-
Information on type of meal last eaten prior to sample extraction available
-
no
-
Files
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
elderly-microbiome-study-_italian-cohort-from-nu-age
|
|
ErNst
|
-
Minimum age
-
18
-
Maximum age
-
79
-
Newborns
-
-
Twins
-
-
Countries
-
-
International/National/Regional (region name)
-
Europe
-
Ethnic Origin
-
-
Health Status
-
- healthy (without any known or apparent acute or chronic illness/disease)
-
Sources of recruitment
-
-
General population
-
Other : Recruitment through Study Center via database for study participants (through mail and E-Mail), leaflets, homepage etc.
-
Number of participants
-
117
-
Number of participants with biosamples
-
106
-
Supplementary Information
-
Total number of participants was 117. Of these, full sets of biosamples (stool) and FFQs were obtained from 106 of these (53 M 53 F).
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
ernst
|
-
Start Date
-
2018-10
-
End Date
-
2018-12
-
Measurements & methods
-
Dietary intake
-
yes/no
-
-
Information collected on habitual food intake collected
-
Information collected on type of diet (vegetarian/vegan/omnivore)
-
Methods
-
-
24-hour dietary recall
-
FFQ
-
24-hour dietary recall
-
Administration method
-
Face-to-face interview
-
Administration type
-
Web/computer-based
-
Number of recalls
-
1
-
Portion size estimation
-
Standard portion sizes with aids such as pictures, models, standard household measure, utensils, etc.
-
Instrument validity
-
Testing validity of the updated instrument was one of the study aims.
-
Instrument development
-
Updated version of GloboDiet
-
Instrument reference
-
Slimani et al. (1999), doi:10.1016/s0169-2607(98)00088-1; Slimani et al. (2011), doi: 10.1038/ejcn.2011.83
-
FFQ
-
Questionnaire name/set of questions
-
DEGS FFQ/RKI (modified version)
-
Type of questionnaire
-
Semi-quantitative
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Number of food items
-
48
-
Reference period
-
1 month (30 days)
-
Frequency categories
-
11
-
Portion size estimation
-
Standard portion sizes without aids
-
Reproducibility
-
no
-
Instrument validity
-
no
-
Instrument development
-
Adapted from DEGS FFQ/RKI
-
Instrument reference
-
Haftenberger et al., Nutrition Journal volume 9, Article number: 36 (2010); doi: 10.1186/1475-2891-9-36.
-
Alcohol consumption
-
Information collected
-
Categorical (no, occassionally, regularly)
-
Questionnaire name/set of questions
-
Single question
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Tobacco consumption
-
Information collected
-
Frequency of smoking cigarettes and other tobacco products; history (total years of smoking)
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Physical activity
-
Device type
-
Accelerometer (ActiHeart/ CamNtech)
-
Device model
-
ActiHeart (Software version: 4.0.131)
-
Measurement period
-
24h
-
Measurement position
-
Chest lead: one electrode is adhered at V1 or V2 (4th intercostals) and the second electrode is placed approximately 10cm away on the left side at V4 or V5
-
Anthropometric measurements
-
Weight/height
-
Measured
-
Other measurements
-
Body composition (BIA)
-
Sociodemographic information
-
Information collected
-
Sex, age
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Face-to-face interview
-
Administration type
-
Web/computer-based
-
Medication
-
Information collected
-
Drug dosage and name
-
Questionnaire name/set of questions
-
Set of questions
-
Antibiotics
-
Yes (treatment within last 6 months)
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Health status
-
Information collected
-
Medical history
-
Questionnaire name/set of questions
-
Various
-
Administration method
-
Face-to-face interview
-
Biological samples and laboratory measurements
-
Samples collected
-
Urine (24h), stool
-
Number of samples
-
109 (urine), 106 (stool)
-
Biomarkers
-
Other biomarkers
-
Measurement(s)
-
Sodium, potassium, nitrogen, osmolality, creatinine
-
Medium
-
Urine
-
Microbiome
-
Microbial material
-
DNA
-
Number of samples/number of individuals
-
212
-
Library source and library selection
-
16S Amplicons (V4 region)
-
Medium/tissue
-
Faeces
-
Sampling collection method
-
Frozen (-20°)
-
Time spent in room temperature
-
Short (immediatey freezing after collection)
-
Sequencing platform
-
MiSeq
-
Read length/depth
-
2x301/20000 - ca. 100000 on average per sample
-
Further details
-
Amplicon sequencing
-
Preservation method
-
Immediate -20, transport on cooling packages, mid-/long-term storage at -80 until aliquotation and DNA isolation
-
Preservation buffer
-
None
-
Information on type of meal last eaten prior to sample extraction available
-
no
-
Files
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
ernst
|
|
FoCus
|
-
Minimum age
-
18
-
Maximum age
-
83
-
Newborns
-
-
Twins
-
-
Countries
-
-
Territory
-
-
International/National/Regional (region name)
-
Europe
-
Ethnic Origin
-
-
Health Status
-
-
Sources of recruitment
-
-
General population
-
Specific population
-
Specific Population
-
-
Clinic patients
-
Other specific population :
-
Number of participants
-
1,811
-
Number of participants with biosamples
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
focus
|
-
Start Date
-
2014
-
End Date
-
2015
-
Measurements & methods
-
Dietary intake
-
yes/no
-
-
Information collected on habitual food intake collected
-
Methods
-
-
FFQ
-
Questionnaire name/set of questions
-
Postadam FFQ
-
Type of questionnaire
-
Semi-quantitative
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Reference period
-
Year
-
Portion size estimation
-
Not quantified
-
Alcohol consumption
-
Information collected
-
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Tobacco consumption
-
Information collected
-
ever/never/current/packs per day
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Anthropometric measurements
-
Weight/height
-
Self-reported, measured for subset
-
Waist/hip circumference
-
Self-reported, measured for subset
-
Other measurements
-
Various
-
Sociodemographic information
-
Information collected
-
Sex, age, residence, education, etc.
-
Administration method
-
Self-reported
-
Medication
-
Information collected
-
Drug dosage and drug name
-
Antibiotics
-
Last treatment and frequency collected
-
Administration method
-
Self-reported
-
Health status
-
Information collected
-
Various
-
Questionnaire name/set of questions
-
Various
-
Administration method
-
Self-reported
-
Measurements
-
Various
-
Biological samples and laboratory measurements
-
Samples collected
-
Blood, urine, stool
-
Number of samples
-
1811
-
Biomarkers
-
Lipids
-
Measurement(s)
-
Various
-
Medium
-
Serum
-
Glucose
-
Measurement(s)
-
Various
-
Medium
-
Serum
-
Inflammation markers
-
Measurement(s)
-
Various
-
Medium
-
Serum
-
Adiposity biomarkers
-
Measurement(s)
-
Various
-
Medium
-
Serum
-
Other biomarkers
-
Measurement(s)
-
Various
-
Medium
-
Serum
-
Metabolomics
-
Measurement(s)
-
Direct infusion high resolution mass spectrometry
-
Medium
-
Serum, urine
-
Untargeted approach
-
yes
-
Targeted groups
-
Several
-
Genomics
-
DNA available
-
yes
-
Number of samples/number of individuals
-
1,811
-
Extraction protocol/ method
-
Mircoarray
-
Microbiome
-
Microbial material
-
DNA, 16s rRNA V3 and V4 region
-
Number of samples/number of individuals
-
1,545
-
Library source and library selection
-
Serum and urine metabolome
-
Medium/tissue
-
Faeces
-
Sampling collection method
-
Samples on dry ice
-
Time spent in room temperature
-
none
-
Sequencing platform
-
Illumina MiSeq
-
Further details
-
16s
-
Preservation method
-
Cooled immediatley -80 within 24 hours
-
Information on type of meal last eaten prior to sample extraction available
-
no
-
Files
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
FoCus_baseline
|
|
MeaTIc
|
Healthy volounteers undergoing an intervention trial.
-
Minimum age
-
18
-
Maximum age
-
50
-
Newborns
-
-
Twins
-
-
Countries
-
-
Ethnic Origin
-
-
Health Status
-
- healthy volounteers undergoing an intervention trial
-
Sources of recruitment
-
-
General Population
-
-
Number of participants
-
113
-
Number of participants with biosamples
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
meatic
|
-
Start Date
-
2020
-
End Date
-
2021
-
Measurements & methods
-
Dietary intake
-
yes/no
-
-
Information collected on habitual food intake collected
-
Information collected on type of diet (vegetarian/vegan/omnivore)
-
Special dietary aspects collected (e.g. supplements, probiotics, prebiotics and synbiotics)
-
Methods
-
-
FFQ
-
Food records
-
Other methods
-
FFQ
-
Questionnaire name/set of questions
-
Italian medium-FFQ
-
Type of questionnaire
-
Semi-quantitative
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Number of food items
-
27
-
Reference period
-
year
-
Frequency categories
-
varying
-
Portion size estimation
-
Standard portion sizes without aids
-
Reproducibility
-
no
-
Instrument validity
-
no
-
Instrument development
-
already existing instrument (medium-FFQ)
-
Instrument reference
-
https://pubmed.ncbi.nlm.nih.gov/25830946/
-
Food records
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Number of recorded days
-
2-7
-
Instrument validity
-
no
-
Instrument development
-
already existing instrument
-
Instrument reference
-
3-day weighted dietary record (WDR)
-
Other methods
-
Other methods
-
Medi-Lite adherence score
-
Instrument(s) access
-
https://pubmed.ncbi.nlm.nih.gov/28276908/
-
Alcohol consumption
-
Information collected
-
quantity and frequency of consumption of alcoholic drinks
-
Questionnaire name/set of questions
-
medium-FFQ, Medi-Lite adherence score
-
Administration method
-
Self-reported
-
Administration type
-
Paper-based
-
Tobacco consumption
-
Information collected
-
consumption (yes/no)
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Face-to-face iinterview
-
Administration type
-
Paper-based
-
Physical activity
-
Information collected
-
frequency, duration and types of PA
-
Questionnaire name/set of questions
-
set of questions
-
Administration method
-
Face-to-face interview
-
Domains covered
-
leisure, occupation
-
Anthropometric measurements
-
Weight/height
-
Measured
-
Waist/hip circumference
-
no
-
Other measurements
-
body composition (BIA)
-
Sociodemographic information
-
Information collected
-
sex, age, residence, country of birth, country of citizenship at time of data collection
-
Questionnaire name/set of questions
-
set of questions
-
Administration method
-
Face-to-face interview
-
Medication
-
Information collected
-
drug name
-
Questionnaire name/set of questions
-
set of questions
-
Antibiotics
-
yes
-
Administration method
-
Face-to-face interview
-
Health status
-
Information collected
-
disease diagnosis
-
Questionnaire name/set of questions
-
set of questions
-
Administration method
-
Face-to-face interview
-
Measurements
-
various
-
Biological samples and laboratory measurements
-
Samples collected
-
blood, urine, stool
-
Number of samples
-
113
-
Biomarkers
-
Lipids
-
Measurement(s)
-
HDL, LDL, cholesterol
-
Medium
-
Serum
-
Glucose
-
Measurement(s)
-
glucose
-
Medium
-
serum
-
Other biomarkers
-
Measurement(s)
-
Folate, vitamin B12, iron, ferritin, triglycerides, AST, ALT, uric acid, urea, creatinine, pro- and anti-inflammatory profile, cytokines, urinary biomarkers of lipid peroxidation, Markers of global peroxidation of fecal water (TBARs) and specific peroxidation of omega-3 and omega-6 PUFA in fecal water
-
Medium
-
other
-
Metabolomics
-
Measurement(s)
-
SCFAs, Aminoacids, Bile acids, Fecal water untargeted metabolomics
-
Medium
-
other
-
Untargeted approach
-
no
-
Targeted groups
-
lipids, aminoacids, secondary bile acids
-
Microbiome
-
Microbial material
-
DNA, 16S rRNA (V3 and V4 hypervariable regions), Fecal microbiota profiles
-
Number of samples/number of individuals
-
113
-
Library source and library selection
-
Metagenome, serum and urine metabolome
-
Medium/tissue
-
faeces
-
Sampling collection method
-
samples on dry ice
-
Time spent in room temperature
-
none
-
Sequencing platform
-
Illumina MiSeq
-
Preservation method
-
Immediate -20, dry ice/-80 within 4-24h
-
Information on type of meal last eaten prior to sample extraction available
-
no
-
Files
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
meatic
|
|
MetaCardis
|
MetaCardis population
|
metacardis
|
|
Diet4MicroGut
|
-
Minimum age
-
18
-
Maximum age
-
60
-
Newborns
-
-
Twins
-
-
Countries
-
-
International/National/Regional (region name)
-
4 cities in Southern and Northern Italy
-
Ethnic Origin
-
-
Health Status
-
-
Sources of recruitment
-
-
General population
-
Other : recruitment through advertisement, exclusion criteria applied
-
Number of participants
-
153
-
Number of participants with biosamples
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
diet4microgut
|
-
Start Date
-
2012
-
End Date
-
2013
-
Measurements & methods
-
Dietary intake
-
yes/no
-
-
Information collected on habitual food intake collected
-
Information collected on type of diet (vegetarian/vegan/omnivore)
-
Special dietary aspects collected (e.g. supplements, probiotics, prebiotics and synbiotics)
-
Methods
-
-
Food records
-
Administration type
-
Paper-based
-
Number of recorded days
-
2-7
-
Portion size estimation
-
Not quantified
-
Instrument validity
-
No
-
Instrument development
-
Already existing instrument - self-completed 7-days food diary
-
Alcohol consumption
-
Questionnaire name/set of questions
-
Set of questions
-
Tobacco consumption
-
Questionnaire name/set of questions
-
Set of questions
-
Sedentary behaviours
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Self-reported
-
Anthropometric measurements
-
Weight/height
-
Self-reported
-
Other measurements
-
Weight, height, BMI
-
Sociodemographic information
-
Information collected
-
Sex, age
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Self-reported
-
Medication
-
Information collected
-
Drug dosage and drug name
-
Questionnaire name/set of questions
-
Set of questions
-
Antibiotics
-
Yes (antibiotics in the previous 3 months were considered an exclusion factor)
-
Administration method
-
Self-reported
-
Health status
-
Information collected
-
Gastrointestinal diseases, metabolic diseases, cancer, allergies, cardiovascular diseases, neurodegenerative diseases, constipation, arthritis, pregnancy, breastfeeding were exclusion factors
-
Questionnaire name/set of questions
-
Set of questions
-
Administration method
-
Self-reported
-
Measurements
-
No
-
Biological samples and laboratory measurements
-
Samples collected
-
Urine, saliva, stool
-
Number of samples
-
459
-
Biomarkers
-
Metabolomics
-
Measurement(s)
-
NMR, GC-MS
-
Medium
-
Feces, urine
-
Untargeted approach
-
yes
-
Proteomics
-
Measurement(s)
-
YES on a subset
-
Medium
-
Feces
-
Untargeted approach
-
no
-
Targeted protein groups
-
No
-
Genomics
-
DNA available
-
yes
-
Number of samples/number of individuals
-
80
-
Extraction protocol/ method
-
Powe Soil kit (qiagen)
-
Genotyping
-
No
-
Microbiome
-
Microbial material
-
16S rRNA V1-V3 regions (454 reads) on 153 subjects, Illumina shotgun on a subset of 50 subjects
-
Number of samples/number of individuals
-
153
-
Library source and library selection
-
Metagenome (16S and shotgun), fecal and urinary metabolome, fecal proteome only on a subset
-
Medium/tissue
-
Feces, urine
-
Sampling collection method
-
Samples self-collected and transported refrigerated to the laboratory within 24 h, then stored at -80°C
-
Time spent in room temperature
-
None
-
Sequencing platform
-
454 Junior (16S seq), Illumina NextSeq (shotgun)
-
Read length/depth
-
~500bp, about 4000 reads/sample (16S seq); about 50M/sample, 2x150bp (shotgun)
-
Further details
-
Shotgun metagenome; 16S rRNA sequencing
-
Preservation method
-
Samples self-collected and transported refrigerated to the laboratory within 24 h, then stored at -80°C
-
Information on type of meal last eaten prior to sample extraction available
-
no
-
Files
-
| # |
Name |
Description |
Size |
Actions |
|
No files could be found.
diet4microgut
|